Journal Papers

1. S. Goud, M. Jacob,"Blind Compressed Sensing Dynamic MRI", IEEE Transactions on Medical Imaging, in press.
   
   
2. S. Bhave, R. Eslami, M. Jacob,"A sparse spectral deconvolution algorithm for non-Cartesian MRSI", Magnetic Resonance in Medicine, in press.
   
   
3. Z. Yang, M. Jacob,"Nonlocal regularization of inverse problems: a unified variational framework", IEEE Trans. Image Processing, in press.
   
   
4. Y. Hu, M. Jacob,"Higher degree total variation (HDTV) regularization for image recovery", IEEE Trans. Image Processing, pp 2559-2571, Vol 21, No 5, May 2012.
   MATLAB code
   
   
5. Y. Hu, S. Goud, M. Jacob,"A fast majorize-minimize algorithm for the recovery of sparse and low rank matrices", IEEE Trans. Image Processing, pp 742-753, Vol 21, No 2, Feb 2012.
   
   
6. S. Goud, Y. Hu, E. DiBella, M. Jacob,"Accelerated dynamic MRI exploiting sparsity and low-rank structure", IEEE Trans. Medical Imaging, pg 1042-1054, vol 30, May 2011.
   MATLAB code
   
   
7. K. Satyananda, M. Jacob,"Non-iterative regularized reconstruction algorithm for non-Cartesian MRI", Magnetic Resonance Imaging, Feb 2011.
   
   
8. R. Eslami, M. Jacob,"Robust Reconstruction of MRSI Data Using a Sparse Spectral Model and High Resolution MRI Priors", IEEE Transactions on Medical Imaging, June 2010, vol 29, issue 6, pp 1297-309
   
   
9. Y. Lin, T. Gu, C. Zhong, S. Kennedy, M. Jacob, J. Zhong, "High-resolution MRS in the presence of field inhomogeneity via intermolecular double-quantum coherences on a 3T whole-body scanner" , Magnetic Resonance in Medicine, Jan 2010.
   
   
10. M. Jacob,"Optimized least square non uniform fast Fourier transform (OLS-NUFFT)" , IEEE Transactions of Signal Processing, vol. 57, issue 6, pp. 2165-2177, Feb 2009
    
    
11. R. Frazin, M. Jacob, M. Wakin, H. Morgan,"Toward reconstruction of coronal mass ejection density from only three points of view" , Astrophysical Journal, April 2009, pp 636-641.
    
    
12. M. Jacob, B. Sutton, "Algebraic decomposition of water and fat in MRI" , IEEE Transactions of Medical Imaging, Feb 2009, pp 173-84.
    
    
13. M. Jacob, X. Zhu, A. Ebel, N.Schuff, and Z.P. Liang, "Improved model-based magnetic resonance spectroscopic imaging" , IEEE Transactions of Medical Imaging, Oct 2007, 1305-18.
    
    
14. I. Khalidov,D. Van De Ville,M.Jacob, F. Lazeyras, M. Unser, "BSLIM: Spectral localization by imaging with explicit B0 field inhomogeneity compensation" , IEEE Transactions on Medical Imaging, Feb 2007, 990-1000.
    
    
15. N. Cao, A. Neharoi, M.Jacob, "Image reconstruction for diffuse optical tomography using sparsity regularization and expectation-maximization algorithm" , Optics Express,2007,pp 13695-13708
    
    
16. M. Jacob, Y. Bresler, V. Toronov, X. Zhang, and A. Webb, "A level-set algorithm for the reconstruction of functional activation in near-infrared spectroscopic imaging" , Journal of Biomedical Optics, Dec 2006, 064029.
    
    
17. A. Amzallag, C. Vaillant, M.Jacob, M. Unser, J.Bednar, JD. Kahn, J.Dubochet, A. Stasiak, JH. Maddocks, "3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy ,Nucleic Acids Res, Sept. 2006.
    
    
18. M. Jacob, T.Blu, C.Vaillant,J.Maddocks and M. Unser, "3-D shape estimation of DNA from stereo cryo-electron micro-graphs using a projection-steerable snake" , IEEE Transactions on Image Processing, 214-27, Jan 2006.
    
    
19. M. Jacob, M. Unser, "Design of steerable filters for feature detection using Canny-like criterion" , IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 26, no. 8, pp. 1007-1019, Aug. 2004.
    
    
20. E.Meijering, M. Jacob, J. C. F. Sarria, P. Steiner, H. Hirling and M. Unser, "Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy" , Cytometry, vol. 58A, no. 2, pp. 167-176, April 2004.
    
    
21. M. Jacob, T. Blu, M. Unser, "Efficient energies and algorithms for parametric snakes" , IEEE Transactions on Image Processing, vol. 13, no. 9, pp. 1231-1244, Sep. 2004.
    
    
22. M. Jacob, T. Blu, M. Unser, "Sampling of Periodic Signals: A Quantitative Error Analysis" , IEEE Transactions on Signal Processing, vol. 50, no. 5, pp. 1153-1159, May 2002.
    
    
23. M. Jacob, T. Blu, M. Unser, "An Exact Method for Computing the Area Moments of Wavelet and Spline Curves , IEEE Transactions on Pattern Analysis and Machine Intelligence", vol. 23, no. 6, pp. 633-642, June 2001.
    
    

Conference Papers

1. S. Goud, M. Jacob, A blind compressed sensing framework for dynamic MRI, IEEE ISBI, Barcelona, May 2012
   
   
2. Y. Hu, M. Jacob Improved higher degree total variation regularization, IEEE ISBI, Barcelona, May 2012
   
   
3. Z. Yang, M. Jacob Robust non-local regularization framework for motion compensated dynamic imaging without explicit motion estmation , IEEE ISBI, Barcelona, May 2012
   
   
4. M. Mani, M. Jacob, A. Guidon, C. Liu, A. Song, V. Magnotta, J. Zhong Acceleration of high angular and spatial resolution diffusion imaging using compressive sensing, IEEE ISBI, Barcelona, May 2012
   
   
5. M. Mani, M. Jacob, A. Guidon, V. Magnotta, J.Zhong, Accelerating non-Cartesian SENSE for large coil arrays, application to motion compensation in multi-shot DWI , IEEE ISBI, Barcelona, May 2012
   
   
6. R.Eslami, M. Jacob, "A sparse reconstruction algorithm for parallel spiral MR spectroscopic imaging", IEEE ISBI, Chicago, April 2011.
   
   
7. S.Goud, Y. Hu, E. DiBella, M. Jacob, "Accelerated first pass cardiac perfusion MRI using improved k-t SLR", IEEE ISBI, Chicago, April 2011.
   
   
8. Z.Yang, M. Jacob, "A unified energy minimization framework for nonlocal regularization", IEEE ISBI, Chicago", April 2011.
   
   
9. S.Goud, M. Nadar, C. Chefd'hotel, Li Zhang, M. Jacob, "Unified reconstruction and motion estimation in cardiac perfusion MRI", IEEE ISBI, Chicago, April 2011.
   
   
10. Y. Hu, M. Jacob, "Image recovery using improved total variation regularization", IEEE ISBI, Chicago, April 2011.
    
    
11. S.Goud, Y. Hu, M. Jacob, "Real-time cardiac MRI using low-rank and sparsity penalties", IEEE ISBI, Rotterdam", April 2010.
    
    
12. K. Satyananda, M. Jacob, "A fast & accurate non-iterative algorithm for regularized non-Cartesian MRI, IEEE ISBI, Rotterdam", April 2010.
    
    
13. R. Eslami, M. Jacob, "Spatial Spectral Modeling for Robust MRSI, IEEE EMBS, Minneapolis", Sept 2009.
    
    
14. R. Eslami, M. Jacob, "Reduction of distortions in MRSI using a new signal model", IEEE international symposium on biomedical imaging, 2009.
    
    
15. Z. Yang, M. Jacob, "Efficient NUFFT algorithm for non-Cartesian MRI reconstruction",, IEEE international symposium on biomedical imaging, 2009.
    
    
16. M. Jacob, "Optimized non-uniform fast Fourier transform (NUFFT) for iterative tomographic reconstruction", IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP) 2009.
    
    
17. R. Eslami, M. Jacob, "Correction of B0 inhomogeneity distortion in magnetic resonance spectroscopic imaging", IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP) 2009.
    
    
18. M.Jacob, H. Le-houllier, S. Bora, S. McAleavey, D. Dalecki, J. McDonough,"The use of speckle tracking for the recovery of displacement and velocity information from sequences of ultrasound images of the tongue", International Seminar on Speech Production, Proceedings of ISSP 2008.
    
    
19. R.Shankar, T. Gu, J. Zhong, M. Jacob,""Improved IDQC reconstruction for inhomogeneity corrected MR spectroscopy", IEEE International Symposium on Biomedical Imaging, Proceedings of ISBI 2008.
    
    
20. M. Jacob, B. Sutton,"Non-iterative decomposition of fat and water", IEEE International Symposium on Biomedical Imaging, Proceedings of ISBI 2007.
    
    
21. R. Morrisson, M. Jacob, M. Do, "Multichannel estimation of coil sensitivities in parallel MRI", IEEE International Symposium on Biomedical Imaging, Proceedings of ISBI 2007
    
    
22. M. Jacob, B. Sutton, "Non-iterative decomposition of fat and water using chemical shift",Proceedings of the ISMRM, 2007, in press
    
    
23. M. Jacob, V. Toronov, A. Webb and Y. Bresler, "A new level-set algorithm for the diffuse optical imaging of the brain", Proceedings of the SPIE: Photonics West (2006)
    
    
24. M. Jacob, B. Sutton, J. Haldar, Z.P. Liang, "On Model Based Spectroscopic Imaging", Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI'06).
    
    
25. M. Jacob, V. Toronov, Y. Bresler, X. Zhang, A. Webb, "Reconstruction of functional activations in diffuse optical imaging ", Proceedings of the ISBI 2006.
26. J. Haldar, M. Jacob, A. Ebel, X. Zhu, N. Schuff, B. Sutton, Z.P. Liang, "Regularized inversion of noisy, incomplete MR spectroscopic imaging data with anatomical prior",Proceedings of the IEEE International Symposium on Biomedical Imaging, 2006
    
    
27. M. Jacob, B. Sutton, J. Haldar, Z.P. Liang, "Improved spectroscopic imaging using echo-planar scans and sparse reconstruction", Proceedings of the ISMRM, 2006.
    
    
28. J. Haldar, M. Jacob, A. Ebel, X. Zhu, N. Schuff, B. Sutton, Z.P. Liang, "Constrained spectroscopic imaging with hard and soft anatomical boundary constraints", Proceedings of the ISMRM, 2006.
    
    
29. I. Khalidov, D. Van De Ville, M.Jacob, F. Lazeyras, M. Unser, "Improved MRSI with Field In-homogeneity Compensation," Proceedings of the SPIE: International Symposium on Medical Imaging: Image Processing, 2006.
    
    
30. F. Aguet, M. Jacob, M. Unser, "Three-Dimensional Feature Detection Using Optimal Steerable Filters" , Proceedings of the 2005 IEEE International Conference on Image Processing (ICIP'05), Genova, Italy, September 11-14, 2005, pp. II-1158-II-1161 .
    
    
31. D. Xu, M. Jacob, Z. P. Liang, "Optimal sampling of k-space on Cartesian grids for parallel imaging", Proceedings of ISMRM 2005, Miami, Florida
    
    
32. D. Xu, L. Ying, M. Jacob, Z. P. Liang, "Optimizing SENSE for Dynamic Imaging" , Proceedings of ISMRM 2005, Miami, Florida.
    
    
33. M. Jacob, T. Deller, X.Zhu, Z. P.Liang, "High-resolution spectroscopic imaging using a deformable spatial spectral model" , Proceedings of ISMRM 2005,
    
    
34. M. Jacob, D. Xu, Z.P. Liang, "Optimal Selection of Phase Encodings in Parallel MR Imaging" , Second International Workshop on Parallel MRI, ETH Zurich, Switzerland, 15-17 October 2004
    
    
35. M. Jacob, T. Blu, M. Unser, "Shape estimation of 3-D DNA molecules from stereo cryo-electron micro-graphs" , Accepted for publication at Proceedings of the International Conference on Image Processing, Singapore, October 2004.
    
    
36. E. Meijering, M. Jacob, J-C. F.Sarria, M. Unser, "Neurite Tracing in Fluorescence Microscopy Images using Ridge Filtering and Graph Searching: Principles and Validation" , Proceedings of ISBI, 2004, pp. 1219-1222.
    
    
37. E. Meijering, M. Jacob, J-C. F.Sarria, M. Unser, "A Novel Approach for Neurite Tracing and Analysis in Fluorescence Microscopy Images" , Proceedings of the Fifth IASTED International Conference on Signal and Image Processing, August 13-15, 2003, Honolulu, USA , pp. 491-495.
    
    
38. M. Jacob, M. Unser, "Optimal steerable filters for feature detection" , Proceedings of the International Conference on Image Processing 2003, September 14-17.
    
    
39. M. Jacob, T. Blu, M. Unser,, "3-D reconstruction of DNA filaments from stereo cryo-electron micrographs " , Proceedings of the First 2002 ISBI 2002, vol.II, pp. 597-600.
    
    
40. M. Feilner, M. Jacob, M. Unser, "Orthogonal Quincunx Wavelets with Fractional Orders " , Proceedings of the 2001 IEEE International Conference on Image Processing, October 7-10, 2001, vol. I, pp. 606-609.
    
    
41. M. Jacob, T. Blu, M. Unser, "A Unifying Approach and Interface for Spline-Based Snakes " , Proceedings of the SPIE International Symposium on Medical Imaging: Image Processing, February 17-22, 2001, vol. 4322, Part I, pp. 340-347.
    
    
42. M. Jacob, T. Blu, M. Unser, "An Error Analysis for the Sampling of Periodic Signals" , Proceedings of the Fourth International Conference on Sampling Theory and Applications (SampTA'01), 2001, pp. 45-48.
    
    
43. M. Jacob, T. Blu, M. Unser, "Exact Computation of Area Moments for Spline and Wavelet Curves", Proceedings of the Fifteenth International Conference on Pattern Recognition (ICPR'00), Barcelona, Spain, September 3-8, 2000, vol. III, pp. 131-134.
    
    

Invited Talks and Seminars

1. M. Jacob, S. Goud, "Blind linear models for the recovery of dynamic MRI data'' in SPIE Conference on Wavelets and Sparsity, 2011.
   
   
2. M. Jacob, Y. Hu, "Higher degree total variation (HDTV) algorithms for biomedical inverse problems'' in SPIE Conference on Wavelets and Sparsity, 2011.
   
   
3. M. Jacob, "Model based algorithms for Biomedical Imaging'' in IEEE-EMBS summer school on Biomedical Imaging, 2008.
   
   
4. I. Khalidov, D. Van De Ville, M. Jacob, F. Lazeyras, M. Unser, "``Magnetic resonance spectroscopy imaging with field inhomogeneity compensation,'' in Swiss Society for Biomedical Engineering 2005 Meeting (SSBE'05), Sep 1-2, 2005.
   
   
5. E. Meijering, M. Jacob, J-C. F. Sarria, P. Steiner, H. Hirling, M. Unser, "A Novel Tool for Neurite Tracing and Analysis in Fluorescence Microscopy" , EMBO Workshop on Advanced Light Microscopy, 11-13 June 2003.
   
   
6. M. Unser, D. Sage, M. Jacob, E.Meijering, P. Thevenaz, " "Image Processing and Analysis of Biological Images" , Live Cell Imaging Workshop, Swiss Federal Institute of Technology
   
   

Reports

1. M. Jacob "Ph.D Thesis", Sept 2003, Swiss Federal Institute of Technology (EPFL), Lausanne.
2. M. Jacob "M.E Thesis", April 1999, Dept. of ECE, Indian Institute of Science (IISc), Bangalore